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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
total RNA-seq
13
small RNA-seq
12
RRBS
12
WGBS
7
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
45
Transcription
24
DNA methylation
8
DNA accessibility
7
3D chromatin structure
Target of assay
3
control
Date released
406
November, 2017
341
May, 2020
336
May, 2021
310
August, 2021
292
October, 2019
228
February, 2021
196
June, 2019
135
February, 2023
118
May, 2019
98
August, 2017
96
May, 2022
94
December, 2017
84
July, 2019
80
April, 2019
80
November, 2018
48
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
22
February, 2020
19
April, 2020
October, 2017
14
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2021
7
January, 2018
5
March, 2023
5
November, 2019
2
June, 2018
1
October, 2022
1
September, 2018
Available data
64
bigWig
62
bam
45
tsv
20
bed bedMethyl
20
bigBed bedMethyl
7
bed narrowPeak
3
bed bed3+
3
hdf5
2
bigBed narrowPeak
Organism
84
Homo sapiens
Biosample type
61
tissue
23
primary cell
Organ
25
heart
18
brain
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
84
AMP
Genome assembly (visualization)
67
hg19
59
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
October, 2017
organ_slims!
connective tissue
pancreas
BIOSAMPLE
ASSAY
84 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
right lobe of liver
2
2
1
gastrocnemius medialis
4
heart
2
1
1
frontal cortex
1
1
1
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primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 13 more…
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