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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
total RNA-seq
18
small RNA-seq
14
RRBS
11
ATAC-seq
11
WGBS
6
ChIP-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
64
Transcription
25
DNA methylation
13
DNA accessibility
6
DNA binding
4
3D chromatin structure
Target of assay
9
control
Date released
709
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
245
October, 2019
205
February, 2023
200
May, 2022
186
June, 2019
168
July, 2018
113
May, 2019
101
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
6
November, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
91
bam
88
bigWig
64
tsv
21
bed bedMethyl
21
bigBed bedMethyl
12
bed narrowPeak
11
fastq
7
bigBed narrowPeak
6
bed bed3+
4
hdf5
Organism
112
Homo sapiens
Biosample type
77
tissue
35
primary cell
Organ
25
heart
18
brain
18
connective tissue
18
epithelium
17
pancreas
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
limb
3
artery
pericardium
1
eye
Project
112
AMP
Genome assembly (visualization)
96
hg19
84
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
limb
pericardium
BIOSAMPLE
ASSAY
112 results
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Clear Filters
total RNA-seq
small RNA-seq
RRBS
ATAC-seq
WGBS
ChIP-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
2
4
islet of Langerhans
1
6
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 23 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic alpha cell
2
+ See 22 more…
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