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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
8
snATAC-seq
5
ATAC-seq
4
total RNA-seq
1
pCHi-C
Assay category
60
DNA binding
13
DNA accessibility
4
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
8
February, 2023
8
January, 2021
1
January, 2018
1
May, 2021
Available data
60
bam
60
fastq
55
bigWig
54
bed narrowPeak
54
bigBed narrowPeak
4
bed bed3
4
txt
Organism
78
Homo sapiens
Biosample type
61
cell line
9
primary cell
8
tissue
Organ
913
pancreas
788
liver
492
epithelium
332
kidney
327
heart
286
brain
228
connective tissue
170
vasculature
164
blood vessel
116
limb
104
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
AMP
9
T1D
Genome assembly (visualization)
59
hg19
54
GRCh38
Lab
69
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
lab.title!
Stephen Parker, UMich
month_released!
February, 2021
May, 2023
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
snATAC-seq
ATAC-seq
total RNA-seq
pCHi-C
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
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