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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
44
ATAC-seq
9
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
1
RRBS
Assay category
59
Transcription
46
DNA accessibility
9
DNA binding
1
DNA methylation
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
October, 2019
5
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
75
bam
63
bigWig
59
tsv
51
bed narrowPeak
6
tagAlign
3
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
115
Homo sapiens
Biosample type
66
cell line
46
tissue
3
primary cell
Organ
857
pancreas
726
liver
648
connective tissue
478
adipose tissue
449
epithelium
347
heart
314
kidney
173
vasculature
168
blood vessel
159
bone element
157
brain
113
artery
83
musculature of body
68
blood
68
bodily fluid
51
limb
39
eye
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
115
AMP
Genome assembly (visualization)
106
GRCh38
72
hg19
Lab
115
AMP-T2D consortium
lab.title!
Stephen Parker, UMich
month_released!
October, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
115 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
3
2
pulmonary artery
2
pericardium
1
tibial artery
1
primary cell
endothelial cell of coronary artery
1
pericardium fibroblast
1
smooth muscle cell of the coronary artery
1
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