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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
total RNA-seq
22
ChIP-seq
20
ATAC-seq
2
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
29
Transcription
22
DNA binding
20
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
37
bed narrowPeak
37
bigWig
9
tsv
4
bam
4
tagAlign
3
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
75
Homo sapiens
Biosample type
40
tissue
31
cell line
4
primary cell
Organ
130
kidney
108
pancreas
92
heart
86
epithelium
75
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
2
artery
2
musculature of body
1
adipose tissue
Project
75
AMP
Genome assembly (visualization)
38
hg19
3
GRCh38
Lab
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
4
AMP-T2D consortium
lab.title!
Stephen Parker, UMich
month_released!
October, 2017
BIOSAMPLE
ASSAY
75 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
liver
20
20
cell line
HepG2
9
18
2
1
1
primary cell
hepatocyte
4
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