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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
55
ChIP-seq
46
ATAC-seq
6
DNase-seq
2
single cell RNA-seq
Assay category
63
Transcription
55
DNA binding
52
DNA accessibility
Target of assay
44
histone
44
histone modification
30
broad histone mark
20
control
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
56
October, 2019
35
February, 2023
3
February, 2020
3
July, 2019
3
May, 2019
2
August, 2021
2
June, 2019
Available data
130
bam
102
bigWig
87
bed narrowPeak
63
tsv
37
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
Organism
170
Homo sapiens
Biosample type
102
tissue
66
cell line
2
primary cell
Organ
872
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
170
AMP
Genome assembly (visualization)
145
GRCh38
110
hg19
Lab
170
AMP-T2D consortium
lab.title!
Stephen Parker, UMich
organ_slims!
adrenal gland
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
170 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
3
36
2
tibial nerve
5
27
1
2
tibial artery
1
19
1
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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