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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
13
ATAC-seq
10
total RNA-seq
6
ChIP-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
47
DNA accessibility
13
Transcription
6
3D chromatin structure
6
DNA binding
6
DNA methylation
Target of assay
33
histone
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
35
June, 2019
10
July, 2019
8
February, 2021
8
February, 2023
7
August, 2017
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
51
bam
41
bed narrowPeak
41
bigWig
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
5
txt
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
Organism
79
Homo sapiens
Biosample type
73
tissue
6
primary cell
Organ
794
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
58
hg19
48
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
lab.title!
Stephen Parker, UMich
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
79 results
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DNase-seq
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
1
1
3
4
1
1
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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