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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
23
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
5
ATAC-seq
3
pCHi-C
3
small RNA-seq
2
DNase-seq
1
RNA microarray
Assay category
410
Transcription
23
DNA binding
17
DNA accessibility
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
August, 2017
23
October, 2018
19
April, 2020
12
July, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bam
408
bigWig
402
tsv
26
fastq
10
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
452
Homo sapiens
Biosample type
451
tissue
2
primary cell
1
in vitro differentiated cells
Organ
737
liver
601
pancreas
553
connective tissue
462
epithelium
434
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
435
AMP
19
LungMap
Genome assembly (visualization)
411
hg19
408
GRCh38
Lab
435
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
month_released!
August, 2017
July, 2018
BIOSAMPLE
ASSAY
454 results
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total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
3
1
subcutaneous adipose tissue
7
12
1
1
lung
10
9
1
omental fat pad
5
11
1
1
2
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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