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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
533
ChIP-seq
184
total RNA-seq
23
DNase-seq
22
ATAC-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
533
DNA binding
188
Transcription
45
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
106
control
88
histone modification
87
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
54
August, 2017
53
November, 2018
48
December, 2017
40
May, 2022
31
August, 2021
19
June, 2019
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
673
bam
616
bigWig
450
fastq
440
bed narrowPeak
361
bigBed narrowPeak
169
tsv
82
tagAlign
80
bed broadPeak
80
bigBed broadPeak
26
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
781
Homo sapiens
Biosample type
401
cell line
379
tissue
1
primary cell
Organ
946
pancreas
786
liver
680
connective tissue
epithelium
491
adipose tissue
393
heart
351
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
781
AMP
Genome assembly (visualization)
617
hg19
525
GRCh38
Lab
710
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
lab.title!
Struan F.A. Grant, CHOP
month_released!
December, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
781 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
2
1
tissue
liver
145
167
2
20
3
1
1
1
1
1
right lobe of liver
10
3
2
1
1
2
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
primary cell
hepatic stellate cell
1
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