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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
60
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
Available data
60
bam
60
fastq
55
bigWig
54
bed narrowPeak
54
bigBed narrowPeak
Organism
69
Homo sapiens
Biosample type
61
cell line
8
primary cell
Organ
926
pancreas
784
liver
676
connective tissue
490
adipose tissue
484
epithelium
364
heart
319
kidney
172
brain
159
bone element
139
vasculature
133
blood vessel
110
artery
89
musculature of body
69
blood
69
bodily fluid
46
limb
40
eye
25
spleen
24
embryo
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
61
AMP
8
T1D
Genome assembly (visualization)
55
hg19
54
GRCh38
Lab
61
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
lab.title!
Struan F.A. Grant, CHOP
month_released!
February, 2018
May, 2019
October, 2019
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
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