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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
6
ATAC-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
1
DNase-seq
1
RNA microarray
Assay category
410
Transcription
73
DNA binding
17
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
19
April, 2020
12
July, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
441
bam
424
bigWig
402
tsv
43
fastq
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bedpe bed3+
1
bigBed broadPeak
Organism
508
Homo sapiens
Biosample type
507
tissue
2
primary cell
1
in vitro differentiated cells
Organ
782
pancreas
738
liver
677
connective tissue
491
epithelium
490
adipose tissue
393
heart
354
kidney
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
491
AMP
19
LungMap
Genome assembly (visualization)
425
hg19
423
GRCh38
Lab
491
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
lab.title!
Struan F.A. Grant, CHOP
month_released!
July, 2018
November, 2018
BIOSAMPLE
ASSAY
510 results
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total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
lung
10
9
1
omental fat pad
5
11
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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