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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
WGBS
5
ATAC-seq
4
pCHi-C
3
small RNA-seq
2
DNase-seq
1
Hi-C
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
7
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
October, 2019
12
July, 2019
3
March, 2020
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
442
bam
424
bigWig
402
tsv
44
fastq
13
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
bigBed broadPeak
1
hic
Organism
492
Homo sapiens
Biosample type
489
tissue
3
primary cell
1
in vitro differentiated cells
Organ
928
pancreas
784
liver
676
connective tissue
490
adipose tissue
489
epithelium
385
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
492
AMP
1
T1D
Genome assembly (visualization)
426
hg19
424
GRCh38
Lab
492
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
lab.title!
Struan F.A. Grant, CHOP
month_released!
October, 2019
BIOSAMPLE
ASSAY
493 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
pCHi-C
small RNA-seq
DNase-seq
Hi-C
RNA microarray
tissue
adipose tissue
382
2
3
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
endothelial cell of umbilical vein
1
in vitro differentiated cells
white fat cell
1
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