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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
59
ChIP-seq
7
ATAC-seq
1
Hi-C
Assay category
194
DNA accessibility
59
DNA binding
1
3D chromatin structure
Target of assay
32
transcription factor
19
histone
19
histone modification
12
control
11
narrow histone mark
8
broad histone mark
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
246
bam
241
bigWig
234
bed narrowPeak
234
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
40
fastq
Organism
254
Homo sapiens
Biosample type
170
tissue
58
primary cell
26
cell line
Organ
80
kidney
43
musculature of body
34
heart
32
limb
30
brain
25
blood
25
bodily fluid
25
epithelium
18
ureter
17
connective tissue
11
pancreas
7
spleen
7
vasculature
6
eye
5
blood vessel
3
liver
2
artery
1
adipose tissue
Project
247
AMP
7
HPAP
Genome assembly (visualization)
241
GRCh38
211
hg19
Lab
247
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
24
inconsistent ontology term
1
inconsistent control
lab.title!
Xin Sun, UCSD
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
254 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 35 more…
primary cell
skeletal muscle satellite cell
8
cardiac fibroblast
3
4
mesenchymal stem cell
7
pancreatic alpha cell
5
cardiac muscle cell
1
2
+ See 19 more…
cell line
GM12878
25
HepG2
1
See all biosamples
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