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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
DNase-seq
65
ChIP-seq
1
Hi-C
Assay category
157
DNA accessibility
65
DNA binding
1
3D chromatin structure
Target of assay
32
transcription factor
19
histone
19
histone modification
12
control
11
narrow histone mark
8
broad histone mark
6
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
188
June, 2019
168
July, 2018
94
December, 2017
92
May, 2019
90
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
16
January, 2021
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
222
bam
210
bed narrowPeak
210
bigBed narrowPeak
210
bigWig
157
bed bed3+
157
bed broadPeak
157
bigBed broadPeak
35
fastq
Organism
223
Homo sapiens
Biosample type
145
tissue
50
primary cell
28
cell line
Organ
81
kidney
43
musculature of body
35
heart
32
limb
brain
27
blood
27
bodily fluid
20
epithelium
18
connective tissue
18
ureter
7
eye
7
spleen
7
vasculature
5
blood vessel
4
pancreas
3
liver
2
artery
1
adipose tissue
Project
223
AMP
Genome assembly (visualization)
210
GRCh38
197
hg19
Lab
223
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
1
inconsistent control
lab.title!
Xin Sun, UCSD
month_released!
November, 2020
organ_slims!
brain
BIOSAMPLE
ASSAY
223 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
renal cortex interstitium
11
+ See 22 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 12 more…
cell line
GM12878
27
HepG2
1
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