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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
40
ChIP-seq
34
ATAC-seq
6
DNase-seq
6
WGBS
6
pCHi-C
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
40
DNA accessibility
40
DNA binding
7
DNA methylation
Target of assay
35
histone
35
histone modification
25
control
broad histone mark
transcription factor
15
narrow histone mark
6
RNA binding protein
Date released
386
February, 2021
32
February, 2023
25
August, 2017
22
October, 2019
18
October, 2018
13
July, 2019
7
June, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
431
bam
413
bigWig
406
tsv
40
bed narrowPeak
27
fastq
10
bigBed narrowPeak
7
bed broadPeak
6
bed bed3+
6
bigBed broadPeak
4
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
513
Homo sapiens
Biosample type
507
tissue
6
primary cell
1
in vitro differentiated cells
Organ
849
pancreas
600
connective tissue
471
epithelium
454
adipose tissue
411
liver
329
kidney
319
heart
213
brain
182
vasculature
177
blood vessel
159
bone element
122
artery
88
limb
76
musculature of body
60
eye
30
embryo
27
nerve
18
blood
18
bodily fluid
18
ureter
16
skeleton
15
spleen
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
514
AMP
Genome assembly (visualization)
442
hg19
412
GRCh38
Lab
514
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Xin Sun, UCSD
target.investigated_as!
broad histone mark
transcription factor
BIOSAMPLE
ASSAY
514 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
islet of Langerhans
14
2
1
4
retina
3
15
3
subcutaneous adipose tissue
7
10
1
1
1
subcutaneous abdominal adipose tissue
16
3
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primary cell
retinal pigment epithelial cell
2
1
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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