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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
4
RRBS
4
total RNA-seq
2
Hi-C
2
pCHi-C
1
ATAC-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
5
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
July, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
63
bigWig
60
bed narrowPeak
52
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
6
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
87
Homo sapiens
Biosample type
76
tissue
11
primary cell
Organ
719
pancreas
710
liver
661
connective tissue
479
adipose tissue
353
epithelium
328
heart
268
brain
224
vasculature
219
blood vessel
158
bone element
152
kidney
138
artery
117
limb
86
musculature of body
61
blood
61
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
87
AMP
Genome assembly (visualization)
68
hg19
48
GRCh38
Lab
87
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
lab.title!
Maike Sander, UCSD
month_released!
July, 2019
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
DNase-seq
RRBS
total RNA-seq
Hi-C
pCHi-C
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
13
muscle of arm
17
psoas muscle
2
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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