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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
690
total RNA-seq
122
ATAC-seq
84
RNA microarray
58
ChIP-seq
6
single cell RNA-seq
3
pCHi-C
3
snDrop-seq
Assay category
696
Transcription
122
DNA accessibility
58
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
5
transcription factor
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
279
August, 2021
218
June, 2019
168
July, 2018
164
May, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
October, 2022
Available data
810
bam
766
bigWig
697
tsv
89
txt
58
tagAlign
50
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
966
Homo sapiens
Biosample type
738
tissue
105
primary cell
97
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
197
liver
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
26
epithelium
26
pancreas
8
kidney
8
skeleton
6
limb
Project
966
AMP
Genome assembly (visualization)
789
hg19
730
GRCh38
Lab
966
AMP-T2D consortium
45
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
0
KPMP
0
Katalin Susztak, Upenn
Audit category:
132
inconsistent ontology term
5
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
966 results
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Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
ChIP-seq
single cell RNA-seq
pCHi-C
snDrop-seq
tissue
adipose tissue
381
liver
143
50
1
bone element
84
bone tissue
58
kidney
5
+ See 13 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
osteoblast
1
1
1
B cell
2
+ See 25 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
2
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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