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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
18
ChIP-seq
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
18
DNA binding
7
DNA accessibility
Target of assay
18
control
5
RNA binding protein
transcription factor
Date released
386
February, 2021
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
420
bam
403
bigWig
400
tsv
21
fastq
5
bed narrowPeak
3
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
427
Homo sapiens
Biosample type
425
tissue
2
primary cell
1
in vitro differentiated cells
Organ
546
connective tissue
511
pancreas
428
adipose tissue
340
liver
334
heart
322
epithelium
281
brain
223
vasculature
218
blood vessel
158
bone element
151
kidney
136
artery
122
limb
65
musculature of body
60
eye
43
nerve
34
embryo
21
vein
18
spleen
18
ureter
16
skeleton
10
blood
10
bodily fluid
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
428
AMP
Genome assembly (visualization)
406
hg19
403
GRCh38
Lab
428
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
August, 2017
March, 2020
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
428 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
1
2
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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