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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
100
ATAC-seq
75
ChIP-seq
49
single cell RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
199
Transcription
101
DNA accessibility
75
DNA binding
Target of assay
34
histone
34
histone modification
30
narrow histone mark
27
control
14
transcription factor
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
317
bam
290
bigWig
198
tsv
74
fastq
50
tagAlign
48
bed narrowPeak
21
bigBed narrowPeak
Organism
376
Homo sapiens
Biosample type
207
tissue
145
primary cell
24
cell line
Organ
199
liver
40
pancreas
33
epithelium
18
blood
18
bodily fluid
7
spleen
2
connective tissue
Project
376
AMP
Genome assembly (visualization)
290
hg19
237
GRCh38
Lab
376
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
376 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
snATAC-seq
tissue
liver
143
50
islet of Langerhans
6
1
spleen
7
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic delta cell
7
pancreatic acinar cell
6
+ See 34 more…
cell line
GM12878
18
HepG2
5
1
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