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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
26
ChIP-seq
20
total RNA-seq
10
ATAC-seq
2
Capture-C
1
RNA microarray
Assay category
118
Transcription
26
DNA binding
10
DNA accessibility
Target of assay
histone
24
histone modification
14
transcription factor
12
broad histone mark
12
control
12
narrow histone mark
6
RNA binding protein
6
chromatin remodeller
Date released
670
February, 2021
318
November, 2017
269
May, 2020
213
August, 2017
199
June, 2019
168
July, 2018
158
May, 2021
134
August, 2021
118
October, 2019
108
July, 2019
103
February, 2023
88
November, 2018
63
December, 2017
61
March, 2020
51
November, 2019
49
April, 2018
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
11
September, 2017
10
December, 2019
10
October, 2017
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
118
tsv
56
bam
34
bigWig
24
bed narrowPeak
23
fastq
14
bigBed narrowPeak
8
tagAlign
Organism
156
Homo sapiens
Biosample type
100
tissue
32
cell line
24
in vitro differentiated cells
1
primary cell
Organ
92
heart
17
blood
17
bodily fluid
8
embryo
6
blood vessel
6
liver
6
vasculature
3
epithelium
2
artery
2
pancreas
1
adipose tissue
1
connective tissue
1
spleen
Project
157
AMP
Genome assembly (visualization)
44
GRCh38
44
hg19
Lab
157
AMP-T2D consortium
128
Katalin Susztak, Upenn
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
157 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
RNA microarray
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
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cell line
GM12878
17
H1-hESC
8
HepG2
5
EndoC_BH1
2
in vitro differentiated cells
neural progenitor cell
7
7
10
primary cell
hepatocyte
1
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