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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
95
ChIP-seq
15
total RNA-seq
10
ATAC-seq
9
DNase-seq
7
WGBS
2
Capture-C
1
FAIRE-seq
1
RNA microarray
1
snATAC-seq
Assay category
115
Transcription
95
DNA binding
21
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
17
histone
17
histone modification
16
recombinant protein
14
control
9
narrow histone mark
8
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
136
bam
113
tsv
111
bigWig
99
bed narrowPeak
88
fastq
73
bigBed narrowPeak
24
tagAlign
13
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
1
txt
Organism
240
Homo sapiens
Biosample type
127
tissue
71
cell line
38
in vitro differentiated cells
5
primary cell
Organ
92
heart
57
liver
15
blood
15
bodily fluid
9
pancreas
9
spleen
8
embryo
6
blood vessel
6
epithelium
6
vasculature
2
adipose tissue
2
artery
2
brain
2
connective tissue
2
musculature of body
Project
241
AMP
Genome assembly (visualization)
120
GRCh38
112
hg19
Lab
241
AMP-T2D consortium
134
Klaus Kaestner, Upenn
128
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
36
Bing Ren, UCSD
24
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
241 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Capture-C
FAIRE-seq
RNA microarray
snATAC-seq
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
spleen
6
1
2
+ See 17 more…
cell line
HepG2
45
1
GM12878
15
H1-hESC
8
EndoC_BH1
2
in vitro differentiated cells
neural progenitor cell
21
7
10
primary cell
hepatocyte
4
pancreatic cell
1
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