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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
94
DNA binding
1
DNA accessibility
1
Transcription
Target of assay
42
transcription factor
31
histone
31
histone modification
21
control
16
narrow histone mark
15
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
94
bam
94
fastq
72
bed narrowPeak
72
bigWig
50
bigBed narrowPeak
16
bed bed3+
1
txt
Organism
96
Homo sapiens
Biosample type
50
tissue
43
in vitro differentiated cells
3
stem cell
Organ
63
liver
19
epithelium
13
embryo
2
musculature of body
Project
96
AMP
Genome assembly (visualization)
78
hg19
77
GRCh38
Lab
134
Klaus Kaestner, Upenn
96
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
February, 2020
BIOSAMPLE
ASSAY
96 results
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Clear Filters
ChIP-seq
single cell RNA-seq
snATAC-seq
tissue
liver
38
right lobe of liver
10
skeletal muscle tissue
1
1
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
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stem cell
hESC
3
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