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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
570
total RNA-seq
84
RNA microarray
42
ChIP-seq
22
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
1
Hi-C
Assay category
576
Transcription
42
DNA binding
22
DNA accessibility
1
3D chromatin structure
Target of assay
33
transcription factor
7
control
2
RNA binding protein
2
chromatin remodeller
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
606
bam
581
bigWig
578
tsv
89
txt
53
bed narrowPeak
35
fastq
30
bigBed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
730
Homo sapiens
Biosample type
577
tissue
124
cell line
26
in vitro differentiated cells
3
primary cell
Organ
457
connective tissue
388
adipose tissue
150
bone element
69
blood vessel
69
heart
69
vasculature
68
artery
27
blood
27
bodily fluid
27
pancreas
26
epithelium
12
brain
9
limb
8
kidney
8
skeleton
7
spleen
5
liver
2
musculature of body
1
eye
1
nerve
1
spinal cord
Project
730
AMP
Genome assembly (visualization)
604
hg19
598
GRCh38
Lab
730
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
129
inconsistent ontology term
5
audit script error
1
inconsistent control
1
inconsistent replicate
BIOSAMPLE
ASSAY
730 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
Hi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
spleen
7
kidney
5
+ See 38 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
GM12878
27
EndoC_BH1
26
HepG2
1
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
1
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