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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
44
total RNA-seq
31
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
1
MPRA
Assay category
195
DNA accessibility
65
Transcription
31
DNA binding
27
DNA methylation
8
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
300
bam
295
bigWig
217
bed narrowPeak
212
bigBed narrowPeak
191
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
hdf5
1
txt
Organism
326
Homo sapiens
Biosample type
240
tissue
86
primary cell
1
cell line
Organ
92
kidney
60
heart
53
musculature of body
48
brain
37
limb
36
connective tissue
33
epithelium
19
vasculature
18
ureter
16
blood vessel
13
adipose tissue
12
liver
10
pancreas
8
eye
5
artery
2
pericardium
Project
327
AMP
Genome assembly (visualization)
289
GRCh38
278
hg19
Lab
327
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
28
inconsistent ontology term
organ_slims!
esophagus
BIOSAMPLE
ASSAY
327 results
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Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
MPRA
tissue
heart
18
2
1
1
muscle of arm
17
kidney
13
1
1
muscle of leg
13
1
brain
12
1
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primary cell
skeletal muscle satellite cell
1
8
1
cardiac fibroblast
3
5
1
mesenchymal stem cell
7
epithelial cell of proximal tubule
1
1
3
1
cardiac muscle cell
1
3
1
+ See 28 more…
cell line
MIN6
1
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