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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
26
total RNA-seq
14
ATAC-seq
8
DNase-seq
5
WGBS
2
single cell RNA-seq
1
FAIRE-seq
Assay category
96
DNA binding
28
Transcription
23
DNA accessibility
5
DNA methylation
Target of assay
61
transcription factor
32
histone
32
histone modification
21
RNA binding protein
17
broad histone mark
16
recombinant protein
15
narrow histone mark
7
chromatin remodeller
3
control
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
28
December, 2018
25
February, 2020
23
January, 2019
21
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
152
fastq
150
bam
146
bigWig
115
bed narrowPeak
83
bigBed narrowPeak
26
tsv
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
2
csv
Organism
152
Homo sapiens
Biosample type
74
primary cell
61
cell line
17
tissue
Organ
79
pancreas
61
epithelium
53
liver
15
blood
15
bodily fluid
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
152
AMP
Genome assembly (visualization)
145
GRCh38
139
hg19
Lab
152
AMP-T2D consortium
Audit category:
35
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
spleen
BIOSAMPLE
ASSAY
152 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
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cell line
HepG2
45
1
GM12878
15
tissue
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
omental fat pad
1
+ See 1 more…
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