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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
59
ChIP-seq
13
ATAC-seq
Assay category
62
Transcription
59
DNA binding
13
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
histone modification
1
narrow histone mark
Date released
150
February, 2021
27
December, 2018
17
January, 2019
15
November, 2018
8
February, 2023
1
January, 2018
Available data
125
bam
112
bigWig
88
txt
61
bed narrowPeak
59
fastq
58
tsv
53
bigBed narrowPeak
4
bed bed3
Organism
218
Homo sapiens
Biosample type
158
tissue
60
cell line
Organ
620
liver
601
connective tissue
574
pancreas
459
adipose tissue
291
heart
273
epithelium
165
vasculature
160
blood vessel
158
bone element
133
kidney
121
artery
99
brain
73
limb
63
musculature of body
60
blood
60
bodily fluid
58
eye
25
embryo
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
218
AMP
Genome assembly (visualization)
124
hg19
119
GRCh38
Lab
218
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
218 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
cell line
GM12878
59
1
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