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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
38
DNase-seq
9
ATAC-seq
7
total RNA-seq
6
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
143
DNA binding
48
DNA accessibility
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
65
histone
65
histone modification
51
transcription factor
43
broad histone mark
25
control
22
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
90
October, 2019
32
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
1
March, 2020
Available data
194
bam
161
bigWig
159
bed narrowPeak
151
bigBed narrowPeak
60
fastq
40
bed broadPeak
40
bigBed broadPeak
38
bed bed3+
7
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
205
Homo sapiens
Biosample type
122
tissue
61
cell line
22
primary cell
Organ
725
pancreas
720
liver
679
connective tissue
491
adipose tissue
366
epithelium
353
heart
286
brain
236
vasculature
230
blood vessel
163
kidney
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
205
AMP
Genome assembly (visualization)
168
hg19
162
GRCh38
Lab
205
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
1
inconsistent ontology term
organ_slims!
gonad
BIOSAMPLE
ASSAY
205 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 9 more…
cell line
GM12878
60
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
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