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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
434
ChIP-seq
160
total RNA-seq
6
DNase-seq
5
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
434
DNA binding
164
Transcription
9
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
104
control
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
167
May, 2020
53
November, 2018
46
December, 2017
21
August, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
2
October, 2019
1
August, 2021
1
December, 2018
1
February, 2020
Available data
601
bam
508
bigWig
420
fastq
329
bed narrowPeak
323
bigBed narrowPeak
165
tsv
49
bed broadPeak
49
bigBed broadPeak
28
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
620
Homo sapiens
Biosample type
355
cell line
251
tissue
11
primary cell
3
in vitro differentiated cells
Organ
620
liver
601
connective tissue
574
pancreas
459
adipose tissue
291
heart
273
epithelium
165
vasculature
160
blood vessel
158
bone element
133
kidney
121
artery
99
brain
73
limb
63
musculature of body
blood
60
bodily fluid
58
eye
25
embryo
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
620
AMP
Genome assembly (visualization)
510
hg19
461
GRCh38
Lab
620
AMP-T2D consortium
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
organ_slims!
blood
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
620 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
345
5
1
1
1
2
tissue
liver
80
147
2
3
1
1
1
1
1
right lobe of liver
5
3
2
1
1
2
primary cell
hepatocyte
1
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
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