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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
18
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
narrow histone mark
Date released
9
November, 2018
7
December, 2018
5
January, 2019
1
March, 2020
1
October, 2017
Available data
22
bam
22
fastq
14
bigWig
12
bed narrowPeak
11
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
23
Homo sapiens
Biosample type
23
tissue
Organ
662
liver
652
pancreas
646
connective tissue
479
adipose tissue
328
heart
317
epithelium
210
vasculature
blood vessel
169
brain
158
bone element
148
kidney
135
artery
107
limb
83
musculature of body
60
blood
60
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
23
AMP
Genome assembly (visualization)
14
GRCh38
12
hg19
Lab
23
AMP-T2D consortium
organ_slims!
blood vessel
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
tissue
spleen
18
2
1
1
1
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