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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ATAC-seq
3
STARR-seq
2
Capture-C
2
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
total RNA-seq
Assay category
6
DNA accessibility
5
Transcription
2
3D chromatin structure
Date released
9
August, 2021
4
March, 2023
3
February, 2023
2
March, 2019
Available data
5
bigWig
4
bed narrowPeak
3
bed bedgraph
3
txt
2
bed bed3+
1
bedpe
1
bedpe bed3+
1
hic
1
tsv
Organism
14
Homo sapiens
Biosample type
7
in vitro differentiated cells
5
cell line
4
tissue
2
stem cell
Organ
liver
4
connective tissue
4
pancreas
2
kidney
Project
14
AMP
4
community
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
3192
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
lab.title!
KPMP
organ_slims!
liver
BIOSAMPLE
ASSAY
18 results
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ATAC-seq
STARR-seq
Capture-C
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
total RNA-seq
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
stem cell
SB Ad3.1
1
1
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