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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
15
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
33
August, 2021
2
March, 2019
Available data
11
bed narrowPeak
11
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
35
Homo sapiens
Biosample type
31
cell line
4
tissue
Organ
28
liver
4
pancreas
2
kidney
Project
35
AMP
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
3068
AMP-T2D consortium
324
Klaus Kaestner, Upenn
209
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
Maike Sander, UCSD
target.investigated_as!
histone
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
15
9
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
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