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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
7
ChIP-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
10
Transcription
7
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
RNA binding protein
1
broad histone mark
Date released
25
August, 2021
2
March, 2019
Available data
10
tsv
3
bed narrowPeak
3
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
27
Homo sapiens
Biosample type
23
cell line
4
tissue
Organ
20
liver
4
pancreas
2
kidney
Project
27
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
3421
AMP-T2D consortium
324
Klaus Kaestner, Upenn
315
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
27
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
January, 2021
target.investigated_as!
RNA binding protein
transcription factor
BIOSAMPLE
ASSAY
27 results
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total RNA-seq
ChIP-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
9
7
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
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