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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 3STARR-seq
  • 2Hi-C
  • 1ATAC-seq
  • 1total RNA-seq
Assay category
  • 23D chromatin structure
  • 1DNA accessibility
  • 1Transcription
Date released
  • 5August, 2021
  • 2March, 2019
Available data
  • 1bedpe
  • 1bedpe bed3+
  • 1hic
  • 1tsv
Organism
  • 7Homo sapiens
Biosample type
  • 4tissue
  • 3cell line
Organ
  • liver
  • 4pancreas
  • 2kidney
Project
  • 7AMP
Genome assembly (visualization)
  • 2hg19
  • 1GRCh38
Lab
  • 3192AMP-T2D consortium
  • 343Kyle Gaulton, UCSD
  • 324Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 2Stephen Parker, UMich
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 1inconsistent ontology term
organ_slims!
  • liver
BIOSAMPLE
ASSAY

7 results

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STARR-seq
Hi-C
ATAC-seq
total RNA-seq
tissue
islet of Langerhans211
cell line
HEK293T2
Synthesized DNA1
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