Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
10
total RNA-seq
3
Hi-C
1
ATAC-seq
1
STARR-seq
1
whole genome sequencing assay
Assay category
16
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
9
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
30
August, 2021
2
March, 2019
Available data
12
bed narrowPeak
12
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
32
Homo sapiens
Biosample type
28
cell line
4
tissue
Organ
27
liver
4
pancreas
Project
32
AMP
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
3134
AMP-T2D consortium
324
Kyle Gaulton, UCSD
318
Klaus Kaestner, Upenn
138
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
32
Bing Ren, UCSD
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
replication_type!
isogenic
BIOSAMPLE
ASSAY
32 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
STARR-seq
whole genome sequencing assay
cell line
HepG2
16
9
1
1
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
Download