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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 16ChIP-seq
  • 9total RNA-seq
  • 1Hi-C
  • 1STARR-seq
  • 1whole genome sequencing assay
Assay category
  • 16DNA binding
  • 9Transcription
  • 13D chromatin structure
  • 1DNA sequencing
Target of assay
  • 9transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 28August, 2021
Available data
  • 12bed narrowPeak
  • 12bigWig
  • 9tsv
  • 1bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 28Homo sapiens
Biosample type
  • 28cell line
Organ
  • 27liver
Project
  • 28AMP
Genome assembly (visualization)
  • 13hg19
Lab
  • 2651AMP-T2D consortium
  • 315Klaus Kaestner, Upenn
  • 170Kyle Gaulton, UCSD
  • 138Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 28Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

28 results

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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
whole genome sequencing assay
cell line
HepG216911
Synthesized DNA1
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