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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ATAC-seq
96
single cell RNA-seq
65
total RNA-seq
54
snATAC-seq
47
WGBS
4
Hi-C
Assay category
179
DNA accessibility
161
Transcription
47
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
128
August, 2021
February, 2023
59
September, 2020
45
February, 2021
14
May, 2023
7
August, 2020
3
October, 2022
1
October, 2017
Available data
153
zippedFastqFolder
94
fastq
64
bed narrowPeak
64
xls
57
txt
11
bigWig
6
tsv
4
hic
3
bedpe bed3+
3
cool
1
bed broadPeak
Organism
391
Homo sapiens
Biosample type
248
primary cell
143
tissue
Organ
142
kidney
116
pancreas
115
epithelium
Project
248
HPAP
143
AMP
Genome assembly (visualization)
86
GRCh38
5
hg19
Lab
3809
AMP-T2D consortium
320
Kyle Gaulton, UCSD
248
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
lab.title!
Maike Sander, UCSD
month_released!
February, 2023
BIOSAMPLE
ASSAY
391 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
15
31
1
pancreatic beta cell
16
1
16
1
pancreatic acinar cell
4
1
tissue
kidney
75
11
49
6
1
islet of Langerhans
1
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