Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
49
total RNA-seq
11
single cell RNA-seq
10
MeRIP-seq
6
snATAC-seq
1
Hi-C
Assay category
81
DNA accessibility
60
Transcription
1
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
128
August, 2021
14
May, 2023
10
November, 2020
Available data
64
bed narrowPeak
64
xls
57
txt
1
hic
Organism
152
Homo sapiens
Biosample type
146
tissue
6
cell line
Organ
142
kidney
10
pancreas
6
epithelium
Project
152
AMP
Genome assembly (visualization)
75
GRCh38
1
hg19
Lab
3887
AMP-T2D consortium
327
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
month_released!
February, 2020
January, 2021
BIOSAMPLE
ASSAY
152 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
MeRIP-seq
snATAC-seq
Hi-C
tissue
kidney
75
49
11
6
1
islet of Langerhans
4
cell line
EndoC_BH1
6
Download