Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
85
single cell RNA-seq
80
ChIP-seq
66
snATAC-seq
34
ATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
239
Transcription
100
DNA accessibility
80
DNA binding
Target of assay
134
histone
134
histone modification
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
161
May, 2021
78
May, 2022
62
February, 2023
45
May, 2020
40
September, 2020
39
February, 2021
16
January, 2021
Available data
160
bam
156
bigWig
124
fastq
96
tsv
73
zippedFastqFolder
68
bed narrowPeak
40
tagAlign
6
txt
2
bed bed3+
Organism
441
Homo sapiens
Biosample type
347
primary cell
52
tissue
37
in vitro differentiated cells
5
cell line
Organ
203
pancreas
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
192
T1D
172
HPAP
77
AMP
Genome assembly (visualization)
174
hg19
136
GRCh38
Lab
3184
AMP-T2D consortium
269
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
audit script error
5
inconsistent ontology term
organ_slims!
epithelium
organ_slims!!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
441 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
Langerhans cell
85
48
monocyte
53
40
1
exocrine cell
39
CD8-positive, alpha-beta T cell
4
13
1
peripheral blood mononuclear cell
8
+ See 33 more…
tissue
islet of Langerhans
11
6
29
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
27
5
cell line
EndoC_BH1
3
2
See all biosamples
Download