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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
51
ATAC-seq
48
snATAC-seq
47
WGBS
40
ChIP-seq
3
Hi-C
Assay category
177
Transcription
99
DNA accessibility
47
DNA methylation
40
DNA binding
3
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
40
May, 2024
7
August, 2020
3
October, 2022
2
March, 2019
Available data
170
fastq
153
zippedFastqFolder
50
bigWig
40
bed narrowPeak
6
tsv
3
bedpe bed3+
3
cool
3
hic
1
bam
1
bed broadPeak
Organism
366
Homo sapiens
Biosample type
324
primary cell
42
tissue
Organ
154
pancreas
152
epithelium
40
heart
Project
324
HPAP
42
AMP
Genome assembly (visualization)
51
GRCh38
4
hg19
Lab
3761
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
month_released!
August, 2021
BIOSAMPLE
ASSAY
366 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
left cardiac atrium
40
islet of Langerhans
2
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