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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
single cell RNA-seq
48
snATAC-seq
39
total RNA-seq
5
ATAC-seq
2
Capture-C
Assay category
124
Transcription
53
DNA accessibility
Date released
54
May, 2022
42
February, 2023
40
September, 2020
39
February, 2021
4
August, 2021
Available data
100
fastq
73
zippedFastqFolder
5
bigWig
4
bed narrowPeak
3
bed bedgraph
3
txt
2
bed bed3+
Organism
179
Homo sapiens
Biosample type
172
primary cell
7
in vitro differentiated cells
Organ
epithelium
152
pancreas
4
connective tissue
Project
172
HPAP
7
AMP
Genome assembly (visualization)
7
hg19
Lab
3246
AMP-T2D consortium
335
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
audit script error
1
inconsistent ontology term
organ_slims!
epithelium
mammary gland
target.investigated_as!
control
BIOSAMPLE
ASSAY
179 results
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single cell RNA-seq
snATAC-seq
total RNA-seq
ATAC-seq
Capture-C
primary cell
Langerhans cell
85
48
exocrine cell
39
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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