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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
73
single cell RNA-seq
49
ATAC-seq
41
WGBS
21
snATAC-seq
3
Hi-C
Assay category
165
Transcription
70
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
59
September, 2020
February, 2021
7
August, 2020
3
October, 2022
Available data
153
zippedFastqFolder
124
fastq
10
bigWig
3
bedpe bed3+
3
cool
3
hic
Organism
279
Homo sapiens
Biosample type
279
primary cell
Organ
146
epithelium
146
pancreas
Project
279
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
2950
AMP-T2D consortium
343
Kyle Gaulton, UCSD
279
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
audit script error
month_released!
February, 2021
organ_slims!
heart
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
279 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
Hi-C
primary cell
pancreatic alpha cell
42
29
25
1
Langerhans cell
73
21
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
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