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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
109
total RNA-seq
18
snATAC-seq
16
ATAC-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
109
Transcription
34
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
234
May, 2021
45
May, 2020
May, 2022
23
February, 2023
16
January, 2021
Available data
220
bigWig
180
bam
114
bed narrowPeak
96
tsv
84
tagAlign
2
bed bed3+
Organism
318
Homo sapiens
Biosample type
239
primary cell
47
in vitro differentiated cells
27
tissue
5
cell line
Organ
27
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
thymus
Project
235
T1D
83
AMP
Genome assembly (visualization)
220
hg19
180
GRCh38
Lab
3887
AMP-T2D consortium
318
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
Audit category:
5
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
month_released!
May, 2022
October, 2017
organ_slims!
thymus
BIOSAMPLE
ASSAY
318 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
islet of Langerhans
5
6
11
pancreas
1
4
cell line
EndoC_BH1
3
2
See all biosamples
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