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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
80
ChIP-seq
17
pCHi-C
8
snATAC-seq
5
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
103
Transcription
80
DNA binding
13
DNA accessibility
Target of assay
134
histone
134
histone modification
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
160
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
Available data
156
bigWig
136
bam
96
tsv
50
bed narrowPeak
40
tagAlign
2
bed bed3+
Organism
218
Homo sapiens
Biosample type
175
primary cell
37
in vitro differentiated cells
5
cell line
1
tissue
Organ
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
166
T1D
52
AMP
Genome assembly (visualization)
156
hg19
136
GRCh38
Lab
2691
AMP-T2D consortium
218
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
33
Bing Ren, UCSD
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
month_released!
December, 2017
organ_slims!
pancreas
target.investigated_as!
broad histone mark
recombinant protein
BIOSAMPLE
ASSAY
218 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
40
1
CD8-positive, alpha-beta T cell
4
13
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
5
27
5
cell line
EndoC_BH1
3
2
tissue
thymus
1
See all biosamples
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