Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ChIP-seq
110
total RNA-seq
23
ATAC-seq
17
pCHi-C
16
snATAC-seq
Assay category
146
DNA binding
110
Transcription
39
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
control
5
RNA binding protein
Date released
227
May, 2021
45
May, 2020
24
May, 2022
February, 2023
16
January, 2021
Available data
217
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
312
Homo sapiens
Biosample type
236
primary cell
42
in vitro differentiated cells
34
tissue
Organ
33
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
213
T1D
99
AMP
Genome assembly (visualization)
235
hg19
180
GRCh38
Lab
3482
AMP-T2D consortium
312
Kyle Gaulton, UCSD
248
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Bing Ren, UCSD
19
Xin Sun, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
month_released!
February, 2023
organ_slims!
mammary gland
target.investigated_as!
control
BIOSAMPLE
ASSAY
312 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
snATAC-seq
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
30
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
32
5
5
tissue
islet of Langerhans
6
18
4
pancreas
1
4
thymus
1
See all biosamples
Download