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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
58
total RNA-seq
17
pCHi-C
8
snATAC-seq
5
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
142
DNA binding
58
Transcription
13
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
transcription factor
8
control
5
RNA binding protein
Date released
222
May, 2021
May, 2020
8
January, 2021
5
February, 2023
Available data
175
bigWig
135
bam
114
bed narrowPeak
84
tagAlign
51
tsv
2
bed bed3+
Organism
235
Homo sapiens
Biosample type
194
primary cell
35
in vitro differentiated cells
5
cell line
1
tissue
Organ
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
165
T1D
70
AMP
Genome assembly (visualization)
175
hg19
135
GRCh38
Lab
2424
AMP-T2D consortium
235
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
23
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
Audit category:
1
inconsistent ontology term
month_released!
May, 2020
organ_slims!
pancreas
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
235 results
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ChIP-seq
total RNA-seq
pCHi-C
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
51
1
CD8-positive, alpha-beta T cell
33
2
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
in vitro differentiated cells
embryonic stem cell
25
5
5
cell line
EndoC_BH1
3
2
tissue
thymus
1
See all biosamples
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