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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 154ChIP-seq
  • 45total RNA-seq
  • 34ATAC-seq
  • 18snATAC-seq
  • 17pCHi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
Assay category
  • 154DNA binding
  • 52DNA accessibility
  • 45Transcription
Target of assay
  • 134histone
  • 134histone modification
  • 74broad histone mark
  • 60narrow histone mark
  • 12transcription factor
  • 8control
  • 5RNA binding protein
Date released
  • 176May, 2021
  • 45May, 2020
  • 18February, 2023
  • 18May, 2022
  • 16January, 2021
Available data
  • 167bigWig
  • 147bam
  • 132bed narrowPeak
  • 84tagAlign
  • 45tsv
  • 18fastq
Organism
  • 273Homo sapiens
Biosample type
  • 186primary cell
  • 42in vitro differentiated cells
  • 40tissue
  • 5cell line
Organ
  • 39pancreas
  • 8blood
  • 8bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • 180T1D
  • 93AMP
Genome assembly (visualization)
  • 185hg19
  • 129GRCh38
Lab
  • 2373AMP-T2D consortium
  • 273Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 5inconsistent ontology term
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

273 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte8421
CD8-positive, alpha-beta T cell3321
peripheral blood mononuclear cell8
B cell21
naive B cel21
in vitro differentiated cells
embryonic stem cell375
tissue
islet of Langerhans296
pancreas4
thymus1
cell line
EndoC_BH132
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