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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
45
total RNA-seq
34
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
52
DNA accessibility
45
Transcription
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
176
May, 2021
45
May, 2020
18
February, 2023
18
May, 2022
16
January, 2021
Available data
167
bigWig
147
bam
132
bed narrowPeak
84
tagAlign
45
tsv
18
fastq
Organism
273
Homo sapiens
Biosample type
186
primary cell
42
in vitro differentiated cells
40
tissue
5
cell line
Organ
39
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
180
T1D
93
AMP
Genome assembly (visualization)
185
hg19
129
GRCh38
Lab
2373
AMP-T2D consortium
273
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
23
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
replicates.library.nucleic_acid_term_name!
RNA
BIOSAMPLE
ASSAY
273 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
2
1
CD8-positive, alpha-beta T cell
33
2
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
29
6
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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