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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 97ChIP-seq
  • 41total RNA-seq
  • 19ATAC-seq
  • 14snATAC-seq
  • 13pCHi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
Assay category
  • 97DNA binding
  • 41Transcription
  • 33DNA accessibility
Target of assay
  • 88histone
  • 88histone modification
  • 55broad histone mark
  • 33narrow histone mark
  • 8control
  • 1transcription factor
Date released
  • 142May, 2021
  • 24May, 2022
  • 14January, 2021
  • 5February, 2023
  • 4May, 2020
Available data
  • 106bigWig
  • 94bam
  • 86bed narrowPeak
  • 38tagAlign
  • 32tsv
  • 24fastq
  • 6txt
  • 2bed bed3+
Organism
  • 189Homo sapiens
Biosample type
  • 123primary cell
  • 34tissue
  • 27in vitro differentiated cells
  • 5cell line
Organ
  • 33pancreas
  • 6blood
  • 6bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • 102T1D
  • 87AMP
Genome assembly (visualization)
  • 124hg19
  • 70GRCh38
Lab
  • 3429AMP-T2D consortium
  • 321Klaus Kaestner, Upenn
  • 189Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 34Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 1inconsistent ontology term
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

189 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte38281
CD8-positive, alpha-beta T cell332
peripheral blood mononuclear cell6
CD4-positive, alpha-beta T cell2
B cell1
tissue
islet of Langerhans6184
pancreas14
thymus1
in vitro differentiated cells
embryonic stem cell261
cell line
EndoC_BH132
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