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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
41
total RNA-seq
19
ATAC-seq
14
snATAC-seq
13
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
97
DNA binding
41
Transcription
33
DNA accessibility
Target of assay
88
histone
88
histone modification
55
broad histone mark
33
narrow histone mark
8
control
1
transcription factor
Date released
142
May, 2021
24
May, 2022
14
January, 2021
5
February, 2023
4
May, 2020
Available data
106
bigWig
94
bam
86
bed narrowPeak
38
tagAlign
32
tsv
24
fastq
6
txt
2
bed bed3+
Organism
189
Homo sapiens
Biosample type
123
primary cell
34
tissue
27
in vitro differentiated cells
5
cell line
Organ
33
pancreas
6
blood
6
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
102
T1D
87
AMP
Genome assembly (visualization)
124
hg19
70
GRCh38
Lab
3429
AMP-T2D consortium
321
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Bing Ren, UCSD
19
Xin Sun, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
replication_type!
anisogenic
BIOSAMPLE
ASSAY
189 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
38
28
1
CD8-positive, alpha-beta T cell
33
2
peripheral blood mononuclear cell
6
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 12 more…
tissue
islet of Langerhans
6
18
4
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
26
1
cell line
EndoC_BH1
3
2
See all biosamples
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