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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 74total RNA-seq
  • 57ChIP-seq
  • 17pCHi-C
  • 15ATAC-seq
  • 7snATAC-seq
  • 3CRISPR genome editing followed by DNA sequencing
Assay category
  • 74Transcription
  • 57DNA binding
  • 22DNA accessibility
Target of assay
  • 46histone
  • 46histone modification
  • 27narrow histone mark
  • 19broad histone mark
  • 11transcription factor
  • 5RNA binding protein
Date released
  • 106May, 2021
  • 41May, 2020
  • 21February, 2023
  • 5January, 2021
Available data
  • 114bigWig
  • 110bam
  • 64tsv
  • 46bed narrowPeak
  • 46tagAlign
Organism
  • 173Homo sapiens
Biosample type
  • 128primary cell
  • 22tissue
  • 20in vitro differentiated cells
  • 3cell line
Organ
  • 21pancreas
  • 2blood
  • 2bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • 153T1D
  • 20AMP
Genome assembly (visualization)
  • 114hg19
  • 110GRCh38
Lab
  • 1261AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 5inconsistent ontology term
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

173 results

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Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
primary cell
monocyte25461
B cell21
CD8-positive, alpha-beta T cell21
naive B cel21
naive thymus-derived CD8-positive, alpha-beta T cell21
tissue
islet of Langerhans5113
pancreas2
thymus1
in vitro differentiated cells
embryonic stem cell5114
cell line
EndoC_BH13
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