Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
total RNA-seq
57
ChIP-seq
17
pCHi-C
15
ATAC-seq
7
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
Assay category
74
Transcription
57
DNA binding
22
DNA accessibility
Target of assay
46
histone
46
histone modification
27
narrow histone mark
19
broad histone mark
11
transcription factor
5
RNA binding protein
Date released
106
May, 2021
41
May, 2020
21
February, 2023
5
January, 2021
Available data
114
bigWig
110
bam
64
tsv
46
bed narrowPeak
46
tagAlign
Organism
173
Homo sapiens
Biosample type
128
primary cell
22
tissue
20
in vitro differentiated cells
3
cell line
Organ
21
pancreas
2
blood
2
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
153
T1D
20
AMP
Genome assembly (visualization)
114
hg19
110
GRCh38
Lab
1261
AMP-T2D consortium
173
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Klaus Kaestner, Upenn
7
Struan F.A. Grant, CHOP
4
Katalin Susztak, Upenn
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
replication_type!
unreplicated
BIOSAMPLE
ASSAY
173 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
primary cell
monocyte
25
46
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 27 more…
tissue
islet of Langerhans
5
11
3
pancreas
2
thymus
1
in vitro differentiated cells
embryonic stem cell
5
11
4
cell line
EndoC_BH1
3
See all biosamples
Download