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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 74total RNA-seq
  • 57ChIP-seq
  • 15ATAC-seq
  • 4pCHi-C
  • 4snATAC-seq
Assay category
  • 74Transcription
  • 57DNA binding
  • 19DNA accessibility
Target of assay
  • 46histone
  • 46histone modification
  • 27narrow histone mark
  • 19broad histone mark
  • 11transcription factor
  • 5RNA binding protein
Date released
  • 93May, 2021
  • 41May, 2020
  • 18February, 2023
  • 2January, 2021
Available data
  • 114bigWig
  • 110bam
  • 64tsv
  • 46bed narrowPeak
  • 46tagAlign
Organism
  • 154Homo sapiens
Biosample type
  • 116primary cell
  • 20in vitro differentiated cells
  • 18tissue
Organ
  • 18pancreas
  • 2blood
  • 2bodily fluid
Project
  • 134T1D
  • 20AMP
Genome assembly (visualization)
  • 114hg19
  • 110GRCh38
Lab
  • 483AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
BIOSAMPLE
ASSAY

154 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
snATAC-seq
primary cell
monocyte2546
CD8-positive, alpha-beta T cell21
B cell2
T follicular helper cell2
T-helper 1 cell2
in vitro differentiated cells
embryonic stem cell5114
tissue
islet of Langerhans5112
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