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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
31
DNase-seq
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
215
DNA binding
36
DNA accessibility
12
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
186
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
30
control
2
RNA binding protein
2
transcription factor
Date released
88
November, 2017
86
October, 2019
29
June, 2019
28
May, 2019
17
July, 2019
16
October, 2017
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
239
bam
217
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bigBed broadPeak
33
bed bed3+
18
fastq
14
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
269
Homo sapiens
Biosample type
253
tissue
16
primary cell
Organ
906
pancreas
790
liver
679
connective tissue
491
epithelium
488
adipose tissue
390
heart
340
kidney
274
brain
233
vasculature
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
269
AMP
Genome assembly (visualization)
214
GRCh38
159
hg19
Lab
269
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
April, 2018
February, 2020
May, 2023
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
269 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
temporal lobe
15
1
1
caudate nucleus
15
1
substantia nigra
16
+ See 75 more…
primary cell
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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